Basic Information
VIS ID
TVIS44029866
Fusion event
HTLV-1-LINC01687 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
NCBI36/hg18
Start
22338382/22044192 (Hg38)
End
22338382/22044192 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01687
Nearest miRNA
hsa-let-7c/Upstream/3358028; hsa-mir-155/Downstream/1035092;
Nearest TSS
ENST00000624081/Upstream/26036; ENST00000419431/Downstream/10177;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/1045947, chr21-CpG: 28/Downstream/3317602
Upstream sequence
ttttttatgaccttgacagttttgaacactactggtcagttattttaaataatgtttctcaactggaaattttctgatgtttttatcatgactgttcttg
Downstream sequence
gggttatgtgttttcagcagaaaaataacagaggcaaagtgtcattttcataatatatcaagggtacatgtcatcaacataacttatcactgtttacaat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate