Basic Information
VIS ID
TVIS44029892
Fusion event
HTLV-1-ZSCAN26 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
NCBI36/hg18
Start
28345730/28269973 (Hg38)
End
28345730/28269973 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZSCAN26
Nearest miRNA
hsa-mir-3143/Upstream/1122285; hsa-mir-10398/Downstream/2314359;
Nearest TSS
ENST00000381078/Upstream/2614; ENST00000259883/Downstream/11599;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/10268, chr6-CpG: 40/Downstream/11416
Upstream sequence
gcaccctgtggccagttaagttgacacataaaattaaccattacaATACCAATCTTTTATTTTCTGGCTAATAATCATCACtttttttgagacagagtct
Downstream sequence
cactctgtcgcccaggctggagtgcagtggtgtgatctcagctcactgcaacctccacctcctgggttcaagtgattctcctgccttagcctcccgagta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate