Basic Information
VIS ID
TVIS44029907
Fusion event
HTLV-1-LRMDA integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
q22.2
Reference genome
NCBI36/hg18
Start
77120931/75691167 (Hg38)
End
77120931/75691167 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D
Target gene
LRMDA
Nearest miRNA
hsa-mir-1265/Upstream/138614; hsa-mir-107/Downstream/10573527;
Nearest TSS
ENST00000439456/Upstream/43658; ENST00000611306/Downstream/91594;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/259354, chr10-CpG: 19/Downstream/421158
Upstream sequence
agatatatagatctatatatctatgtacatagatatatagatctatatatctatatacatagatatatagatctatatatctatatacatagatatatag
Downstream sequence
atctatatatctatgtacatagatatatatacacacacacacatatatatatacacatatatgtgtgtgtgtgtgtatgtatgtatgtatatgtgtatat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate