Basic Information
VIS ID
TVIS44029912
Fusion event
HTLV-1-UBIAD1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p36.22
Reference genome
NCBI36/hg18
Start
11280775/11298131 (Hg38)
End
11280775/11298131 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
UBIAD1
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-mir-222-3p
Nearest miRNA
hsa-mir-12136/Upstream/1330673; hsa-mir-101-1/Downstream/731027;
Nearest TSS
ENST00000473358/Upstream/24197; ENST00000423056/Downstream/20962;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/24641, chr1-CpG: 196/Downstream/180481
Nearest cancer related gene
UBIAD1(TSG, No orient, 0)
Upstream sequence
ctcactgccacctccatcttctgggttcaagcgattatcctgcctcagcctcccgaatagctgggattacagcatgcaccaccatgcccagctaattttg
Downstream sequence
tatttttagtagagaagggtttcaccatgttggtcaggctggtctcaaactcctgacctcaagtgatccacccactctggcctcccaaagtgttgggatt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate