Basic Information
VIS ID
TVIS44029928
Fusion event
HTLV-1-LRFN5 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
NCBI36/hg18
Start
41227090/41688137 (Hg38)
End
41227090/41688137 (Hg38)
Orient
-
Location type
Intronic
Target gene
LRFN5
Nearest miRNA
hsa-mir-208a/Upstream/4735746; hsa-mir-1185-1/Downstream/6072858;
Nearest TSS
ENST00000550708/Upstream/79722; ENST00000554171/Downstream/11290;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/81011, chr14-CpG: 22/Downstream/3199332
Upstream sequence
ttatgttaagtgtggtaaaccaggcacaaaaagacaaactttacatttcttcacttatttgtgagagctaaaaattaacagttgagcacatggagatagc
Downstream sequence
cagtagaataatggttaccagagcctgggaaaggtagttggtgggtgggtatgcggggatgctttatggatacaaaaatataattagatagaataagatc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate