Basic Information
VIS ID
TVIS44029950
Fusion event
HTLV-1-LOC102724497 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
p13.1
Reference genome
NCBI36/hg18
Start
74829940/74749305 (Hg38)
End
74829940/74749305 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2E
Target gene
LOC102724497
Nearest miRNA
hsa-mir-1285-2/Upstream/4496300; hsa-mir-10b/Downstream/341507;
Nearest TSS
ENST00000437798/Upstream/74382; ENST00000472302/Downstream/84676;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/33617, chr2-CpG: 18/Downstream/5320
Upstream sequence
TATTCAAATGTCCCAAAGAATCTTGATGAATTCTTATAAATGAATTTTATGATTACTCTGTAGTGAGCTGTGAAAGGAACACAGCTGCAGACAGAAAAAC
Downstream sequence
TAGGAATGTTGCTCTGGACTAGGTGATATATGCTAATGATCTGGACAGCCGTACCTAGCCACTTTGCCATAGAAAAGCTAAAGGATTACTGATATGTAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate