Basic Information
VIS ID
TVIS44029953
Fusion event
HTLV-1-RPL10P18 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
NCBI36/hg18
Start
33517474/33540414 (Hg38)
End
33517474/33540414 (Hg38)
Orient
+
Location type
Intronic
Target gene
RPL10P18
Nearest miRNA
hsa-mir-124-1/Upstream/3583066; hsa-mir-10400/Downstream/7730634;
Nearest TSS
ENST00000518652/Upstream/26813; ENST00000517292/Downstream/26711;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/25406, chr8-CpG: 86/Downstream/26007
Upstream sequence
GGGCCAAGTTCAAGTTCCCTGGCCACCAGAAGATCCACATCTCCAAGAAGTGGGGCTTTACCAAGTTCAATGTGGATGAATGAGAAGACATAGTGGCTGA
Downstream sequence
GAAGCAGCTCATCCCAGATAGCTGCAGGGTCAAGTACATCCCCAGTCATGGCCCTCTGGACAAGTGGCAGGTCCGGCACTGGTGAGGGCTTCCACTGTGC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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