Basic Information
VIS ID
TVIS44029960
Fusion event
HTLV-1-TTC12 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q23.2
Reference genome
NCBI36/hg18
Start
112706789/113330857 (Hg38)
End
112706789/113330857 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11G
Target gene
TTC12
miRNAs that regulate target gene
hsa-mir-296-3p
Nearest miRNA
hsa-mir-10392/Upstream/1817342; hsa-let-7a-2/Downstream/119166;
Nearest TSS
ENST00000527297/Upstream/1127; ENST00000534793/Downstream/4170;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/15916, chr11-CpG: 39/Downstream/56864
Upstream sequence
GCATGAAATTTCTTTTAAGATGTGTGTTTTACCTGAAAAACCTTGTTAATTTTGCACAGCACTTCATAAAACTTATCTTTGTTTTGATATAACAGCATGA
Downstream sequence
TTTTCAATAACTTAGAATCAAGTAAAATTGAGGTACCAGGAGAATGTGCCAGGTTTATCCTGTGGCTTCAATTCTTGGGTACAGCACACCTACCCTAGCC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate