Basic Information
VIS ID
TVIS44029962
Fusion event
HTLV-1-LINC01317 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
NCBI36/hg18
Start
34085565/34006994 (Hg38)
End
34085565/34006994 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01317
Nearest miRNA
hsa-mir-1301/Upstream/588430; hsa-mir-10b/Downstream/1464411;
Nearest TSS
ENST00000437798/Upstream/300086; ENST00000423593/Downstream/60232;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/279377, chr2-CpG: 191/Downstream/2348260
Upstream sequence
atcctctgtttgtttatttatttgtttgttaggaatatttaacggaagatctaccttcttagcagattttaaagtatgaaatacagtattgttaacttta
Downstream sequence
ggcactatgctgtacagtagatctgttggacttactcatcttgtataaatgaaactttgtaccctttaactaatacctgccccgttttcttcttctccta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate