Basic Information
VIS ID
TVIS44029981
Fusion event
HTLV-1-LOC101927795 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q33.1
Reference genome
NCBI36/hg18
Start
201374881/200801913 (Hg38)
End
201374881/200801913 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2I
Target gene
LOC101927795
Nearest miRNA
hsa-mir-10b/Upstream/11668802; hsa-mir-1244-1/Downstream/5981321;
Nearest TSS
ENST00000437798/Upstream/66736; ENST00000460660/Downstream/8681;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/215609, chr2-CpG: 134/Downstream/9353
Upstream sequence
aacagactaatacaattcccatcaatgagaaactgaataagaaactgtggtatatatacaccatggaatactatgcagcaataaaaaaagaacaagatca
Downstream sequence
tgtcttttgcaggaacatgaagggagatggaggccattatccttagcaaactaatgcaggaagagaaaaccaaatactgcatgttctcacttataagtgg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate