Basic Information
VIS ID
TVIS44030008
Fusion event
HTLV-1-FLJ34503 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
NCBI36/hg18
Start
114347548/113919691 (Hg38)
End
114347548/113919691 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6F
Target gene
FLJ34503
Nearest miRNA
hsa-mir-10398/Upstream/7135471; hsa-mir-1202/Downstream/5149356;
Nearest TSS
ENST00000381078/Upstream/15553; ENST00000521888/Downstream/29632;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/59180, chr6-CpG: 128/Downstream/50556
Upstream sequence
GTACCAGTAACACCCCTAGAGTGAGCCAAGAGAAGATGAGGTAAGGAGGAAAGGGAGACTTAGTCATGGGCCTAGGAAAAAGCGTGGGGGGTTACCTATG
Downstream sequence
TAGAAGGTATGGATGGTGAAGCTGGATCTCTTTTTACCTGTGGTGAGCACACCATACCGGACAACCCAGGGCCTACATTATAGAGGGTGCACTCTGCACA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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