Basic Information
VIS ID
TVIS44030016
Fusion event
HTLV-1-C4orf51 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q31.21
Reference genome
NCBI36/hg18
Start
146875716/145735114 (Hg38)
End
146875716/145735114 (Hg38)
Orient
+
Location type
Intronic
Target gene
C4orf51
Nearest miRNA
hsa-mir-12113/Upstream/2391579; hsa-mir-1305/Downstream/673469;
Nearest TSS
ENST00000502981/Upstream/2660; ENST00000514334/Downstream/29941;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1651, chr4-CpG: 24/Downstream/26244
Upstream sequence
AAAGAAACAGGCTTGATGCACTTGGGCGAGGGCTTTGGTGCAGTGAGGAGATGAATAACATGGAAGTTGCAACGTGACATGAAAATTAGCATGTATTGTA
Downstream sequence
GTGGAGACAATGGCTTGAGAGTTCCAGGTCGGGGATTGCCACAGTGCCTTGGAGAAGGGGACTGTTGGAGTGCTCCTAAGCCTGGAGGAGGTGTTTGCTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate