Basic Information
VIS ID
TVIS44030017
Fusion event
HTLV-1-LOC105374535 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
NCBI36/hg18
Start
24820154/25209434 (Hg38)
End
24820154/25209434 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LOC105374535
Nearest miRNA
hsa-mir-12113/Upstream/689144; hsa-mir-1243/Downstream/3610148;
Nearest TSS
ENST00000502981/Upstream/48762; ENST00000604448/Downstream/10969;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/48766, chr4-CpG: 95/Downstream/24402
Upstream sequence
gagacctttcctcaaaaaaagaaaagaaaaaGAggccaggcacggttgctcatacctataatccccagcactttgggaggccgaggcaggcagattgcct
Downstream sequence
gaggtcaggagttcaagaccagcctgggcaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggcaggcgcctgtaatcc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate