VISDB Viral Integration Site DataBase

VIS ID

TVIS44030020

Fusion event

HTLV-1-CEMIP2 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr9

Cytoband

q21.13

Reference genome

Start

End

73507368/71702632 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-30a-3p ; hsa-mir-215-5p ; hsa-mir-196a-5p ; hsa-mir-192-5p ; hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-let-7d-5p ; hsa-mir-331-3p ; hsa-mir-125b-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-32-3p ; hsa-mir-5587-5p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-6759-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-942-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-4762-5p ; hsa-mir-141-5p ; hsa-mir-5580-3p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-2113 ; hsa-mir-3682-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-4696 ; hsa-mir-617 ; hsa-mir-570-3p ; hsa-mir-302a-5p ; hsa-mir-138-1-3p ; hsa-mir-499b-5p ; hsa-mir-4714-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-6882-5p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-548as-3p ; hsa-mir-585-5p ; hsa-mir-873-5p ; hsa-mir-198 ; hsa-mir-2861 ; hsa-mir-5589-3p ; hsa-mir-571 ; hsa-mir-219a-1-3p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-4682 ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4742-5p ; hsa-mir-556-5p ; hsa-mir-4761-3p ; hsa-mir-3972 ; hsa-mir-1202 ; hsa-mir-4715-3p ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-6131 ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-3194-5p ; hsa-mir-7152-3p ; hsa-mir-520f-5p ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-551b-3p ; hsa-mir-551a ; hsa-mir-3691-3p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-4691-3p ; hsa-mir-5697 ; hsa-mir-4761-5p ; hsa-mir-338-5p ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-4465 ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-18b-5p ; hsa-mir-18a-5p ; hsa-mir-4735-3p

Nearest miRNA

hsa-mir-101-2/Upstream/892548; hsa-let-7a-1/Downstream/12267116;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/255451, chr9-CpG: 137/Downstream/65529

Upstream sequence

CGCTTTGGTTAGGAGAACTGTAGATTATTTCCATTTTCTTTATGTTTTTCTATATTTTCCTTATTTTGTTTAATGAATAAGTACTGCCTTCATAACTTCT

Downstream sequence

AAAAGTGTTATTTTCAGAAATGGCATTATGACAAAATCTATGACTTCCCTATAATTATCTTAAATTGAGGGGTAAAAAATTGTCCATCTCTTCCTTTTGC