VISDB Viral Integration Site DataBase

VIS ID

TVIS44030031

Fusion event

HTLV-1-SENP2 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr3

Cytoband

q27.2

Reference genome

Start

End

186806467/185605985 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-30d-5p ; hsa-mir-1249-5p ; hsa-mir-1275 ; hsa-mir-1321 ; hsa-mir-149-3p ; hsa-mir-3153 ; hsa-mir-3154 ; hsa-mir-3175 ; hsa-mir-3179 ; hsa-mir-3202 ; hsa-mir-4271 ; hsa-mir-4419a ; hsa-mir-4434 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4481 ; hsa-mir-4510 ; hsa-mir-4516 ; hsa-mir-4525 ; hsa-mir-4665-5p ; hsa-mir-4706 ; hsa-mir-4716-3p ; hsa-mir-4723-5p ; hsa-mir-4725-3p ; hsa-mir-4728-5p ; hsa-mir-4734 ; hsa-mir-4739 ; hsa-mir-4745-5p ; hsa-mir-4747-5p ; hsa-mir-4749-5p ; hsa-mir-4756-5p ; hsa-mir-5010-5p ; hsa-mir-5196-5p ; hsa-mir-5681a ; hsa-mir-5698 ; hsa-mir-5703 ; hsa-mir-604 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-625-5p ; hsa-mir-6731-5p ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-6756-5p ; hsa-mir-6758-5p ; hsa-mir-6766-5p ; hsa-mir-6770-5p ; hsa-mir-6780b-5p ; hsa-mir-6782-5p ; hsa-mir-6785-5p ; hsa-mir-6794-5p ; hsa-mir-6795-5p ; hsa-mir-6797-5p ; hsa-mir-6804-5p ; hsa-mir-6825-5p ; hsa-mir-6856-5p ; hsa-mir-6870-5p ; hsa-mir-6873-5p ; hsa-mir-6878-5p ; hsa-mir-6883-5p ; hsa-mir-6887-5p ; hsa-mir-7111-5p ; hsa-mir-744-5p ; hsa-mir-8085 ; hsa-mir-92a-2-5p ; hsa-mir-185-3p ; hsa-mir-6829-5p

Nearest miRNA

hsa-let-7g/Upstream/352713; hsa-mir-1248/Downstream/161862;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/19276, chr3-CpG: 288/Downstream/217275

Upstream sequence

ctgtactaagataacagtggtgaaaggatgtaatctcttttcatggaatttaaagtttagtgtggaatatagacattaaacaaataatcataccagtaat

Downstream sequence

gaatttcagtggttccaggtgactaaaggaaaaatgcagtatcagaaggggtatatgcaataggagagCTAAATCTAGAGTTGGGGTTGGAAATGGGCAT