Basic Information
VIS ID
TVIS44030037
Fusion event
HTLV-1-LOC105370590 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q31.1
Reference genome
NCBI36/hg18
Start
79523156/79987060 (Hg38)
End
79523156/79987060 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370590
Nearest miRNA
hsa-mir-1260a/Upstream/2720770; hsa-mir-1185-1/Downstream/13961166;
Nearest TSS
ENST00000550708/Upstream/12891; ENST00000553979/Downstream/224254;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/125072, chr14-CpG: 29/Downstream/954306
Upstream sequence
CATTTTACTTAAAAAATACCTAAAACTTACCCAACCCTATTTTACCTTTTTCTGGGGCCTGATTCTGTTTCTGCATGTTAACGTCAATAGTTAAAAATGG
Downstream sequence
GGTTGAACTCCTGAACCAGGTGACCAGTGCTTCGCTGGACTTTTGCAAATGTTTCTGGAAAGTTATTTATAAATTAAATCAAATCAGAAACTCTCTAGAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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