Basic Information
VIS ID
TVIS44030041
Fusion event
HTLV-1-LINC01644 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr22
Cytoband
q13.31
Reference genome
NCBI36/hg18
Start
46257477/47483064 (Hg38)
End
46257477/47483064 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
LINC01644
Nearest miRNA
hsa-let-7a-3/Upstream/1369296; hsa-mir-12114/Downstream/791300;
Nearest TSS
ENST00000624155/Upstream/137495; ENST00000426452/Downstream/4024;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/269492, chr22-CpG: 25/Downstream/726281
Upstream sequence
aatgatatcGgctatgaatggggtatttatgtttccctaaaatccatatatagaagcctaaatccccaatgtggtatttggaaatgggacctttgggagg
Downstream sequence
taattaggtcataggtgtggaggcttcatgaatgggattggtgcccttataaggagacaaagagacagaagttccctctcttcaatcttatgaagataca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate