Basic Information
VIS ID
TVIS44030059
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
NCBI36/hg18
Start
240899992/242670067 (Hg38)
End
240899992/242670067 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-101-1/Upstream/1537721; hsa-mir-3124/Downstream/676109;
Nearest TSS
ENST00000473358/Upstream/145371; ENST00000439562/Downstream/337401;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/144687, chr1-CpG: 43/Downstream/220228
Upstream sequence
AATAACCTCTTCTCAAATGCAGCTTAGCATAAAGGTAAATGTTAAAAGCTTACAAGCAGGTGGAATGACAGTCCAATTTCATGTACTAAAGCCTATTACC
Downstream sequence
TAAAAATGTGTTTTCCAAGTTCATATTTTTGTTTCCATCTAAAAGCTAGTTCTGTTTGGGTTATTTGCCCAAAGCAAATTAGAAGAGAATGTGGATGTTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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