Basic Information
VIS ID
TVIS44030069
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
Host Sequence
Chromosome
chr1
Cytoband
p36.13
Reference genome
End
17329469/17130387 (Hg38)
Orient
-
Fragile sites / regions
Nearest miRNA
hsa-mir-12136/Upstream/271366; hsa-mir-101-1/Downstream/147502;
Nearby gene
LOC105376808(+5278) ;
Upstream sequence
GATGGAGGTTTTGTCCAAGGTCTTGATAGGACACAAGTCCTATTGTTAGTCATTTAAACAGGATTTCCCATAACCTAAAAAGGGTGGTGGCATAGTCTGT
Downstream sequence
GTCCCCAGGGTTCAGCATATGCATTTCCTATTTCTTAAGTCAGATCTGGGGCTAAGTAATACCCTCCCAGGTAGCTTCACCACTTGTTTGGTTTCAATTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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