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Viral Integration Site DataBase
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TVIS44030069
Basic Information
VIS ID
TVIS44030069
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p36.13
Reference genome
NCBI36/hg18
Start
17329469/17130387 (Hg38)
End
17329469/17130387 (Hg38)
Orient
-
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/271366; hsa-mir-101-1/Downstream/147502;
Nearest TSS
ENST00000473358/Upstream/10952;
ENST00000634972/Downstream/59396;
Nearest CpG islands
None/Target,
chr1-CpG: 111/Upstream/10794
,
chr1-CpG: 37/Downstream/18820
Nearby gene
LOC105376808
(+5278) ;
Upstream sequence
GATGGAGGTTTTGTCCAAGGTCTTGATAGGACACAAGTCCTATTGTTAGTCATTTAAACAGGATTTCCCATAACCTAAAAAGGGTGGTGGCATAGTCTGT
Downstream sequence
GTCCCCAGGGTTCAGCATATGCATTTCCTATTTCTTAAGTCAGATCTGGGGCTAAGTAATACCCTCCCAGGTAGCTTCACCACTTGTTTGGTTTCAATTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Sample Information
×
Sample name
Co8
Sample type
Nontumor
Age
63
Gender
Male
CpG Island Information
×
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