Basic Information
VIS ID
TVIS44030097
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q25.3
Reference genome
NCBI36/hg18
Start
180267235/182031477 (Hg38)
End
180267235/182031477 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-101-1/Upstream/1593087; hsa-mir-1182/Downstream/10684851;
Nearest TSS
ENST00000473358/Upstream/218772; ENST00000428646/Downstream/30235;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1271, chr1-CpG: 91/Downstream/24992
Upstream sequence
TTGTTAGGGCAATGCCTTTATCTCAATATTCTGTAAATGTAGCatggacggattgatgatggacagacaggtgggcgagggaatagctacaaggatggac
Downstream sequence
atatacgtgggagaaaagggacggacaaatgtataaatagatgttttaaggttgggtaggtgagtggatggaACTAAAGCTTGGAGAGTAAATCTTGATG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate