Basic Information
VIS ID
TVIS44030100
Fusion event
HTLV-1-ALPK1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q25
Reference genome
NCBI36/hg18
Start
113562559/112421954 (Hg38)
End
113562559/112421954 (Hg38)
Orient
-
Location type
Intronic
Target gene
ALPK1
Nearest miRNA
hsa-mir-12113/Upstream/1561307; hsa-mir-1243/Downstream/225920;
Nearest TSS
ENST00000502981/Upstream/11039; ENST00000509209/Downstream/1834;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/9787, chr4-CpG: 55/Downstream/88715
Upstream sequence
tagcaactttggcatatgaattttttccttctttattaagttgagaattttcaccttctcacttaaaggaagcactttacagcttctctttggcacatcc
Downstream sequence
aaattgccagcatcactactcctgtcctttgcggccattgttaagtaaaatacgggtgacttgaacacaagcactgcattacctgacagacagttgatct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate