VISDB Viral Integration Site DataBase

VIS ID

TVIS44030116

Fusion event

HTLV-1-NEGR1 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr1

Cytoband

p31.1

Reference genome

Start

End

72471976/72233705 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-4769-5p ; hsa-mir-4654 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-4648 ; hsa-mir-4437 ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-24-3p ; hsa-mir-3185 ; hsa-mir-299-3p ; hsa-mir-5088-5p ; hsa-mir-4524b-3p ; hsa-mir-561-3p ; hsa-mir-1277-5p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-183-3p ; hsa-mir-670-5p ; hsa-mir-190a-3p ; hsa-mir-3140-5p ; hsa-mir-4319 ; hsa-mir-125b-5p ; hsa-mir-125a-5p ; hsa-mir-4732-3p ; hsa-mir-345-3p ; hsa-mir-5011-5p ; hsa-mir-4314 ; hsa-mir-7977 ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-4284 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-4680-3p ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-4443 ; hsa-mir-6515-5p ; hsa-mir-421 ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-6792-5p ; hsa-mir-6894-5p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-766-5p ; hsa-mir-3145-3p ; hsa-mir-545-3p ; hsa-mir-330-3p ; hsa-mir-5002-5p ; hsa-mir-4272 ; hsa-mir-1179 ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-4422 ; hsa-mir-629-3p ; hsa-mir-4279 ; hsa-mir-6830-3p ; hsa-mir-4482-5p ; hsa-mir-3130-5p ; hsa-mir-548as-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-6868-3p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-335-3p ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-4742-3p ; hsa-mir-4528 ; hsa-mir-6877-3p ; hsa-mir-6819-3p

Nearest miRNA

hsa-mir-101-1/Upstream/1165989; hsa-mir-11399/Downstream/4826438;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/1152605, chr1-CpG: 55/Downstream/49621

Upstream sequence

tgctgcgaaggacaagatttcattcttttcatggctacatagtattctaggatgtatacataccacattttctatatccaatccattattgatgagcacc

Downstream sequence

taggttgattttgtgtctttgctattgtaaatagcacttcaatgaccatataaatgtgagtgtctttttggtagaatgatttagttccctttgggtatat