Basic Information
VIS ID
TVIS44030170
Fusion event
HTLV-1-LOC105377781 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
p23.3
Reference genome
NCBI36/hg18
Start
2110384/2174786 (Hg38)
End
2110384/2174786 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377781
Nearest miRNA
hsa-mir-3674/Upstream/98146; hsa-mir-10400/Downstream/4447338;
Nearest TSS
ENST00000518652/Upstream/31437; ENST00000633673/Downstream/320736;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/44347, chr8-CpG: 35/Downstream/6874
Upstream sequence
ATTATTATATCACACCTTAAATTAACAGGGAACCATTTCAAATCCCCATTTGAAGTTTTACTTTACATCAAATTctcactagactgaaagatccccgaga
Downstream sequence
gtggggagacattgtttgcttctgtttatagaggctcagtacagtccctggaacttgacaagtactagctgtgctggctgaatggacgCACATACTTTAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate