Basic Information
VIS ID
TVIS44030182
Fusion event
HTLV-1-CNTNAP5 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
Host Sequence
Chromosome
chr2
Cytoband
q14.3
Reference genome
End
125299682/124825635 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1285-2/Upstream/11104267; hsa-mir-10b/Downstream/2597902;
Upstream sequence
GCAGGAAGCAGAATCTTCAGGGTGAGAAATGAATGCATCCTAATGGCACTTTCCTGCTTGGATAGGAACTCATTCTTAATCAGAACAGCTTTTGAAATGG
Downstream sequence
GAAACACTTGTGGGAGGGGAGGATTATACTTTAGGGCCTGGAAGGGGCTGCTGATCAAAAGTCTCTTTTTATTCTGGAATCTGGGGAGAAGGCAGAAATC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate