Basic Information
VIS ID
TVIS44030192
Fusion event
HTLV-1-LOC105377509 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
NCBI36/hg18
Start
158968604/157828002 (Hg38)
End
158968604/157828002 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377509
Nearest miRNA
hsa-mir-12113/Upstream/5291486; hsa-mir-1305/Downstream/1300800;
Nearest TSS
ENST00000502981/Upstream/190315; ENST00000514381/Downstream/331679;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/605101, chr4-CpG: 20/Downstream/382354
Upstream sequence
acaaccaacaccacagaaatacaaaagatcattcaaggtgactatgaacacctttatgtgcataaactagaaaacctagaagaaatggataaattcctgg
Downstream sequence
aaaaatactacccttctagtttaaatcaggaagaattagataccctcagtgaccaataacaagcagcaagattgaaatggtagttaaaaaattaccaatg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate