Basic Information
VIS ID
TVIS44030199
Fusion event
HTLV-1-LOC105369536 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q24.1
Reference genome
NCBI36/hg18
Start
120826392/121450473 (Hg38)
End
120826392/121450473 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105369536
Nearest miRNA
hsa-mir-10392/Upstream/2137461; hsa-let-7a-2/Downstream/649284;
Nearest TSS
ENST00000527297/Upstream/144723; ENST00000532451/Downstream/1730;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/23022, chr11-CpG: 73/Downstream/1356
Upstream sequence
CTAGATGAGGGGTGGGAGGTGACAGTGGTTCAGTGGCTTTCTTGGAGGATGCATGATTGTTTGaattattatttttaattgacatatataagtatataat
Downstream sequence
aaatatatatgttatatatatGAGTTAGAGCTGAATTGCACAATATGAGCAAGGCGTTCCTCTCAGCTTCAAAACCAGCTCTGGGTTGTAAACAAGCTAC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate