Basic Information
VIS ID
TVIS44030225
Fusion event
HTLV-1-BBOX1-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
p14.2
Reference genome
NCBI36/hg18
Start
27127431/27149308 (Hg38)
End
27127431/27149308 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11D
Target gene
BBOX1-AS1
Nearest miRNA
hsa-mir-210/Upstream/3730118; hsa-let-7a-2/Downstream/365662;
Nearest TSS
ENST00000527297/Upstream/93882; ENST00000525833/Downstream/69427;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/817043, chr11-CpG: 29/Downstream/213764
Upstream sequence
aatctgcctccgtgatccaatcacctcacacccggccccacctccaacactggagattacaattgaacatgagatttgggcagggacatatatccaaacc
Downstream sequence
atatcattctgcccctggcccctccctaaactcatgtccttctcacttttcaaaatcccttctcaacagtcccccacagtcttaacttctttaagcatta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate