Basic Information
VIS ID
TVIS44030239
Fusion event
HTLV-1-FARP1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q32.2
Reference genome
NCBI36/hg18
Start
97685935/98235680 (Hg38)
End
97685935/98235680 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13D
Target gene
FARP1
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-204-5p ; hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-let-7f-5p
Nearest miRNA
hsa-mir-1297/Upstream/27080; hsa-mir-1267/Downstream/1120451;
Nearest TSS
ENST00000623511/Upstream/57863; ENST00000601656/Downstream/92511;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/58549, chr13-CpG: 22/Downstream/239105
Upstream sequence
GTGGGATGTcataaagctcaccatcttaatcatttttaagtacacgtttcactagtgttaataagtatattcacgttgctatgcatcagagctccagagc
Downstream sequence
tctttcctttttaaaactgaaactctagatacattaaacagcccccatttccccgtcccccagcccctgccaaccatctaggctcattttatacactggt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate