Basic Information
VIS ID
TVIS44030248
Fusion event
HTLV-1-PSMD14 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q24.2
Reference genome
NCBI36/hg18
Start
161880092/161315335 (Hg38)
End
161880092/161315335 (Hg38)
Orient
+
Location type
Intronic
Target gene
PSMD14
miRNAs that regulate target gene
hsa-mir-23b-3p
Nearest miRNA
hsa-mir-128-1/Upstream/907453; hsa-mir-10b/Downstream/7267608;
Nearest TSS
ENST00000437798/Upstream/6735; ENST00000477232/Downstream/66025;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/6598, chr2-CpG: 55/Downstream/25714
Upstream sequence
tatgatgcgcaagacagccccacgaacaacaaaaaattatctggtcctgaatatcagtagtactgaagttagtaaatcctgGCTaattttattgtcatca
Downstream sequence
ttagagactagagtgctataatctgtctccttcccattcatctttgattttgtagtaatgtgaaacattttctttgttgctttttttccttttgccatta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate