Basic Information
VIS ID
TVIS44030253
Fusion event
HTLV-1-LOC105370214 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q21.1
Reference genome
NCBI36/hg18
Start
55812990/56340855 (Hg38)
End
55812990/56340855 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13B
Target gene
LOC105370214
Nearest miRNA
hsa-mir-1297/Upstream/1166307; hsa-mir-1267/Downstream/4858943;
Nearest TSS
ENST00000623511/Upstream/757331; ENST00000377931/Downstream/800063;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/3138645, chr13-CpG: 25/Downstream/799982
Upstream sequence
ctgctaaacactgctaaaagaaaacatagatgacataaatgatttaaaaggcattctatattcatggacaggaataatcaatattgttaaaatgtccata
Downstream sequence
cttcccaaagcaatctgtagattcaatgctatttctatcaaactgccaaatacattttcacagaattaccataaaacctattctaaaacttatacagaac
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate