Basic Information
VIS ID
TVIS44030263
Fusion event
HTLV-1-ARHGAP24 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q21.23
Reference genome
NCBI36/hg18
Start
86647644/85507467 (Hg38)
End
86647644/85507467 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARHGAP24
Nearest miRNA
hsa-mir-12113/Upstream/2754037; hsa-mir-1243/Downstream/215001;
Nearest TSS
ENST00000502981/Upstream/31981; ENST00000509709/Downstream/63126;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/31651, chr4-CpG: 77/Downstream/1086563
Upstream sequence
tgcactattgtttacctttttattcactggtatgtggactctttgaggaaaatgattctgtttgtttcatcttatccatctcaaagcttttggtgcctag
Downstream sequence
cttatagtaggtatttagtgtgtatttgtgaatgTCATCAGTGATAAGTGTCTGTATAAATAACTGACATTCCCATCAGCAGAAAGAGAATAAACAATGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate