VISDB Viral Integration Site DataBase

VIS ID

TVIS44030265

Fusion event

HTLV-1-SLC7A11 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr4

Cytoband

q28.3

Reference genome

Start

End

139365222/138224618 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-mir-30a-5p ; hsa-mir-148b-3p ; hsa-mir-340-5p ; hsa-mir-155-5p ; hsa-mir-128-3p ; hsa-mir-215-5p ; hsa-mir-181a-5p ; hsa-mir-192-5p ; hsa-mir-32-5p ; hsa-mir-26b-5p ; hsa-mir-27a-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-218-5p ; hsa-mir-3913-3p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-1279 ; hsa-mir-595 ; hsa-mir-6867-5p ; hsa-mir-4789-5p ; hsa-mir-186-3p ; hsa-mir-548e-5p ; hsa-mir-6835-3p ; hsa-mir-142-3p ; hsa-mir-500a-3p ; hsa-mir-767-5p ; hsa-mir-5589-3p ; hsa-mir-4282 ; hsa-mir-489-3p ; hsa-mir-25-3p ; hsa-mir-367-3p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-92b-3p ; hsa-mir-190a-3p ; hsa-mir-223-5p ; hsa-mir-410-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-6874-5p ; hsa-mir-505-5p ; hsa-mir-1-5p ; hsa-mir-587 ; hsa-mir-574-5p ; hsa-mir-3163 ; hsa-mir-3941 ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-5193 ; hsa-mir-6826-5p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-5571-5p ; hsa-mir-6778-3p ; hsa-mir-1281 ; hsa-mir-5089-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-4640-3p ; hsa-mir-5683 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6504-3p ; hsa-mir-3653-5p

Nearest miRNA

hsa-mir-12113/Upstream/12717311; hsa-mir-1305/Downstream/5118842;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/1412030, chr4-CpG: 21/Downstream/335962

Upstream sequence

AGTTTTCACTGCCTGATATAGTTACTAGCTCACTTCAGAATTTAACAATCAATGCAAATGTCAGCAACACATAATCTTTAAAGgcaaaaaaatggaaata

Downstream sequence

gcctaaacctcctaaaggaaggctaattaaggtatatcattttaatagtttatatgcagccacttaaaattatgaggcagttaaatatttattacaagaa