Basic Information
VIS ID
TVIS44030269
Fusion event
HTLV-1-EFCAB6-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr22
Cytoband
q13.2
Reference genome
NCBI36/hg18
Start
42245475/43518262 (Hg38)
End
42245475/43518262 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
EFCAB6-AS1
Nearest miRNA
hsa-mir-1281/Upstream/1594965; hsa-let-7a-3/Downstream/1682692;
Nearest TSS
ENST00000624155/Upstream/2155; ENST00000564696/Downstream/13799;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/83020, chr22-CpG: 53/Downstream/293805
Upstream sequence
cttgagcctggaaggttgaggctgcagtgagctgggatcatgccagttcactccagcctgggtaacagagggagaccctgtctcaaacaaacaaacaaac
Downstream sequence
aaaaaaaACCGTtttttattttgaaatacttttccttttgaggaagagttgtaaggctaatacagggagttcctccatacccttcagccagtttcccctg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate