Basic Information
VIS ID
TVIS44030288
Fusion event
HTLV-1-LOC105377641 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
NCBI36/hg18
Start
16774957/16758446 (Hg38)
End
16774957/16758446 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377641
Nearest miRNA
hsa-mir-12127/Upstream/884597; hsa-let-7g/Downstream/174750;
Nearest TSS
ENST00000440867/Upstream/60967; ENST00000460467/Downstream/44205;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/152822, chr3-CpG: 179/Downstream/125442
Upstream sequence
tgctgcttttaggatcctctctttacccttaatctttggaagtctgattttaaaatgccttgaggtagtctttgggttatatctgcttagtgttcagtaa
Downstream sequence
ccttcttgtctttggatactgatatttaactctaggtttcagaagttctctgttattattcatttgaataaactttctacccctcccctatctctttatc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate