Basic Information
VIS ID
TVIS44030308
Fusion event
HTLV-1-LRRC52-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
NCBI36/hg18
Start
163734193/165498332 (Hg38)
End
163734193/165498332 (Hg38)
Orient
-
Location type
Intronic
Target gene
LRRC52-AS1
Nearest miRNA
hsa-mir-101-1/Upstream/3155692; hsa-mir-1182/Downstream/409589;
Nearest TSS
ENST00000473358/Upstream/52977; ENST00000294818/Downstream/3338;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/141241, chr1-CpG: 21/Downstream/99696
Upstream sequence
ACTTATTGAGACAGCTAACGGACCCAAGGAGAAGGCAAAGGAGACAGCACTGGAAGCTGCAGAGAAGGCCAAAGACCCAGCCATCCAGGGAGCCCCCAAA
Downstream sequence
CAGCAGCTGCAGTTAGTGTAGCCAGCTCACCACGCCACAGCACCCCAGACAGCTCAGCCAACTTCCTCTACCCTCTCCCCATTGTATGTTATTATTAAAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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