Basic Information
VIS ID
TVIS44030311
Fusion event
HTLV-1-PIK3C2G integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
NCBI36/hg18
Start
18315868/18271667 (Hg38)
End
18315868/18271667 (Hg38)
Orient
-
Location type
Intronic
Target gene
PIK3C2G
Nearest miRNA
hsa-mir-1244-3/Upstream/598273; hsa-let-7i/Downstream/5940754;
Nearest TSS
ENST00000382841/Upstream/10127; ENST00000536967/Downstream/10377;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/2360067, chr12-CpG: 131/Downstream/857724
Upstream sequence
ACCAGGGCCACAAGTGGACAAAGTGAGATGGCAGTGGCTTATTATTTTTCTCCTACCTCTCAGACTATTCTGTACTTTTCTTTTTGGGGTCAATCCATTA
Downstream sequence
TATACTGATTGTCTCTTATACTGAGATTTTATTCTCATATTGATATCTCTTCTTAATCTCTTAACCGTCTTTAAAAAAGACTTATGGAATAAACCATAag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate