Basic Information
VIS ID
TVIS44030316
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
NCBI36/hg18
Start
201862421/203626670 (Hg38)
End
201862421/203626670 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-101-1/Upstream/1623434; hsa-mir-1182/Downstream/1821632;
Nearest TSS
ENST00000473358/Upstream/109; ENST00000466407/Downstream/117;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/138739, chr1-CpG: 40/Downstream/2673
Nearby gene
ATP2B4(+117) ;
Upstream sequence
cctcctccacccctactcAGCTTTCTATTCAACAAGTGAGAGCAAGGGCGGGGAAGAAAGCCGACAGGGGAGAGGATTGCTTCCCTTTCTTTTCCCATTC
Downstream sequence
CCCCTTAAGACGAACCAGGAAGTAACCGCAAGAATCGGGCCACCTTAACAGTAGAGTAATGGTTTGGCCTCGCGCCAAGTCCCACCTCTGTTCCAGCTCC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate