Basic Information
VIS ID
TVIS44030320
Fusion event
HTLV-1-SGCZ integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
p22
Reference genome
NCBI36/hg18
Start
15136186/15234306 (Hg38)
End
15136186/15234306 (Hg38)
Orient
+
Location type
Intronic
Target gene
SGCZ
Nearest miRNA
hsa-mir-124-1/Upstream/380796; hsa-mir-10400/Downstream/2447272;
Nearest TSS
ENST00000518652/Upstream/679380; ENST00000509177/Downstream/4033;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1957515, chr8-CpG: 87/Downstream/2422
Upstream sequence
AAAATAAAGGCTAAAGCTAGCAGTTAAATCTCGACTGCTAAAAGGCACCCAGTACTCTATAACTCAGAGATACTCCAGGATGGAGGGGGCTTTTTCTAAT
Downstream sequence
ATCAATATTCATTAACACCCACATTTCCAAAGCAGCAACCCATATTTTGGATTTTTTGATGTTTCTTCTTTAAAGTAAACACCAGGGCAAAATCCAGAGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate