Basic Information
VIS ID
TVIS44030326
Fusion event
HTLV-1-BFSP2-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q22.1
Reference genome
NCBI36/hg18
Start
134691959/133490425 (Hg38)
End
134691959/133490425 (Hg38)
Orient
-
Location type
Intronic
Target gene
BFSP2-AS1
Nearest miRNA
hsa-let-7g/Upstream/1504494; hsa-mir-1224/Downstream/877379;
Nearest TSS
ENST00000440867/Upstream/18083; ENST00000504867/Downstream/53041;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/451374, chr3-CpG: 151/Downstream/82934
Upstream sequence
acccttcactcagatttcacaaatattaacattttCATAGGCAGACAGAAGCAAATTATTTTTAAGTTGAAGTAGTTAAGTTTCTTTTATACTTATTTAG
Downstream sequence
TTCTAGGAATTTTGACTGATAGACATTGACTGGTGGGGGAGGTGGAGGTTGCTGGCTGACCAAGGTGATCTGTGGTGGTTGGTGGCATGTTGGTGGCTAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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