Basic Information
VIS ID
TVIS44030327
Fusion event
HTLV-1-LINC01197 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
NCBI36/hg18
Start
93633827/95289594 (Hg38)
End
93633827/95289594 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC01197
Nearest miRNA
hsa-mir-10393/Upstream/2385119; hsa-mir-1302-10/Downstream/1043667;
Nearest TSS
ENST00000557528/Upstream/109; ENST00000554837/Downstream/37405;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/432999, chr15-CpG: 53/Downstream/37132
Upstream sequence
TCTGGTTTTTGTTTTTGTTTAAACTGGTCTCAGAACATGGAGAAGTACGACCATCGTCAACTGAAACAAAAACAAAACAAAACAAAAAAACCATGGACTT
Downstream sequence
GAGCTAAAATTCTTAAATGAATTGTTTAGCTTCAAAATGTAAAACTGTCCCAGCAAGAATGTCACAAAGTGTAAGCACAGAAGGATCTGTATTTTACTGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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