Basic Information
VIS ID
TVIS44030330
Fusion event
HTLV-1-GDNF-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
p13.2
Reference genome
NCBI36/hg18
Start
37899026/37863167 (Hg38)
End
37899026/37863167 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
GDNF-AS1
Nearest miRNA
hsa-mir-10397/Upstream/1715179; hsa-mir-103a-1/Downstream/694335;
Nearest TSS
ENST00000502646/Upstream/22729; ENST00000514532/Downstream/6740;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/22543, chr5-CpG: 104/Downstream/394615
Upstream sequence
tatccatctatctacctacctattatctacccatctatattatctatctgtctgtctgtctgtctgtctatctatctatctatctatctatctatctatc
Downstream sequence
tatctatctatctatatctgtctataGATAGATACATGAGAGGGGAtttttttaaggttttaattttgatacaggatctccctctgtcacccaggctgga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate