Basic Information
VIS ID
TVIS44030331
Fusion event
HTLV-1-LINC01278 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
q11.1
Reference genome
NCBI36/hg18
Start
62691040/63554435 (Hg38)
End
62691040/63554435 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01278
Nearest miRNA
hsa-let-7f-2/Upstream/8102853; hsa-mir-105-1/Downstream/231567;
Nearest TSS
ENST00000429181/Upstream/203091; ENST00000617377/Downstream/89613;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/202888, chrX-CpG: 43/Downstream/200398
Upstream sequence
tcacaatgtctttgtaaaaataaataaacagtggtgttgcctcatgagtgcattttggcaagaacaccatggatgtgatgttatttccttctcggtgcat
Downstream sequence
agtatcacaaggcgcacaaggttcacatgtcttttattggtgactggtgatgatgactttaatgatttggtttaaagtggtttccaccagttttctccat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate