Basic Information
VIS ID
TVIS44030346
Fusion event
HTLV-1-YWHAEP7 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
NCBI36/hg18
Start
33286990/37853258 (Hg38)
End
33286990/37853258 (Hg38)
Orient
-
Location type
Intronic
Target gene
YWHAEP7
Nearest miRNA
hsa-mir-1180/Upstream/238219; hsa-mir-10226/Downstream/849004;
Nearest TSS
ENST00000595228/Upstream/50470; ENST00000620247/Downstream/71157;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/107666, chr17-CpG: 16/Downstream/67670
Upstream sequence
gagaatcacctgagtccaggaagttaaggctgcagtgagctatgattgcaccactgcaaggacagaataagatcctgtgtcttaaaagaaaGTAATTATC
Downstream sequence
TGTTCcacttccactcccaggtggaattgaaacaagaactcaagcaaatagtgcaccaatgttcatagcaccattagtcacacaataggaaaaggtgaaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate