Basic Information
VIS ID
TVIS44030350
Fusion event
HTLV-1-LOC107983981 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
NCBI36/hg18
Start
50992828/52913339 (Hg38)
End
50992828/52913339 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107983981
Nearest miRNA
hsa-mir-10393/Upstream/636139; hsa-mir-11181/Downstream/2459601;
Nearest TSS
ENST00000557528/Upstream/108397; ENST00000559915/Downstream/203026;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/107060, chr15-CpG: 33/Downstream/846119
Upstream sequence
tTATAACTCGAGTTATTCTAAACAATACAGTTTGaaataatttgattttaataatataaataattatGACTCAAATTATTGAACAATATCTGGAATTACC
Downstream sequence
CTCATTGTAAGGGGATGGGGAAATGTTTCCCCCAGCTTTCTACATCTTAAGTGTAAATTGGAATTCAGTACATATTATTGATGAAACTACATGCCCCATT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate