Basic Information
VIS ID
TVIS44030366
Fusion event
HTLV-1-KCNG2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
NCBI36/hg18
Start
75718693/79857705 (Hg38)
End
75718693/79857705 (Hg38)
Orient
+
Location type
Intronic
Target gene
KCNG2
Nearest miRNA
hsa-mir-1-2/Upstream/7004323;
Nearest TSS
ENST00000575820/Upstream/64979; ENST00000316249/Downstream/5963;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/8587, chr18-CpG: 149/Downstream/5560
Upstream sequence
AGCTTTACTTGGCAGAGGTCCTAGAATACAGTTGTCAGCAACAACCAGAAAAAGGGCTTGACGTTGGCGGTGGAAGGCAGCGGCTCTCAAGCCTCAGTGA
Downstream sequence
TGAGGCTTGCGTGTTACTGGATCCCCCCGAGACCTACTCACTCAGAATGATTTTTATAAatggagataaaattcacctaacgttatatttaccattttta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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