Basic Information
VIS ID
TVIS44030391
Fusion event
HTLV-1-STRA6 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q24.1
Reference genome
NCBI36/hg18
Start
72266907/74187513 (Hg38)
End
72266907/74187513 (Hg38)
Orient
-
Location type
Intronic
Target gene
STRA6
Nearest miRNA
hsa-mir-10393/Upstream/887534; hsa-mir-11181/Downstream/223844;
Nearest TSS
ENST00000557528/Upstream/4635; ENST00000561332/Downstream/1720;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/11962, chr15-CpG: 25/Downstream/57955
Nearest cancer related gene
STRA6(OG, No orient, 0)
Upstream sequence
CCAGCActcattttgcagttggggaaattgaggtcaggagaggtaatgcactttgcccaaggtcactcagcttgtaagtgatggaacagagattctaatc
Downstream sequence
tagtttgcctgactcagtctgagctctctgtgAGTGATGCCAGGCTTATGGTCCAAGTGCTGGGTGGCAGTCCTAACAGAAGCTCTGAGCTCAGAAGACA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate