Basic Information
VIS ID
TVIS44030398
Fusion event
HTLV-1-LOC105369890 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q21.33
Reference genome
NCBI36/hg18
Start
88991742/90073834 (Hg38)
End
88991742/90073834 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
LOC105369890
Nearest miRNA
hsa-let-7i/Upstream/3328685; hsa-mir-1178/Downstream/4487955;
Nearest TSS
ENST00000382841/Upstream/126141; ENST00000548722/Downstream/33905;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/363546, chr12-CpG: 30/Downstream/880193
Upstream sequence
gcatcacgaacttggcagaaagaaagtgggagtagttgaaaggctttaagcagtggagcaacatgatAAACAGTACAGCTTAATGGGATTTTAATAAAGC
Downstream sequence
ATTATATTGTTGATTATAGAAGTAATCTTCCTTCAGGGTTTTTTTTAATTGAAGACACAGTTTTTCAATTTTTTTATTCTAATTTCTTTTGCAGATAGTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate