Basic Information
VIS ID
TVIS44030403
Fusion event
HTLV-1-ANO4 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
NCBI36/hg18
Start
99740205/100822296 (Hg38)
End
99740205/100822296 (Hg38)
Orient
-
Location type
Intronic
Target gene
ANO4
miRNAs that regulate target gene
hsa-mir-378c
Nearest miRNA
hsa-let-7i/Upstream/632347; hsa-mir-1178/Downstream/3108129;
Nearest TSS
ENST00000382841/Upstream/27338; ENST00000549234/Downstream/36966;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/104452, chr12-CpG: 62/Downstream/387313
Upstream sequence
ACCCTTTGTTATCAGCAAAGGCCTGTGCTTCCTCTGTGCTGCTGAGCCACAGTCAGCTAGGCTGGATCATGTGGAGAACTACTCAACAAAGCTGGATTTC
Downstream sequence
CTTGACCAGTCAGCAGGTAGAAGGTTTTTCTTCACTTCTTTCCCCAAAGTCCCAACTCGAGTCTAACTACGATTCGAAGAAAATCAAGAGCTCCAGTGTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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