Basic Information
VIS ID
TVIS44030414
Fusion event
HTLV-1-TBC1D32 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q22.31
Reference genome
NCBI36/hg18
Start
121609210/121246365 (Hg38)
End
121609210/121246365 (Hg38)
Orient
-
Location type
Intronic
Target gene
TBC1D32
Nearest miRNA
hsa-mir-10398/Upstream/1231108; hsa-mir-1202/Downstream/5238266;
Nearest TSS
ENST00000381078/Upstream/9303; ENST00000282561/Downstream/88065;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1896106, chr6-CpG: 31/Downstream/88160
Upstream sequence
aagattctccataactaaagaaatcacaccgactcttcaacctaaaagcacgaagaattaaattaggctaaaatgaacaatacacattaaagtcagatcc
Downstream sequence
ttaagagaaaaaaaatttttctaatccgatcaaaaataaattcaaaaaacaagttgaagaaacagtctacccaaatgaaaaaagtaattctggtaatttg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate