Basic Information
VIS ID
TVIS44030416
Fusion event
HTLV-1-GALNT13 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
NCBI36/hg18
Start
154850336/154285577 (Hg38)
End
154850336/154285577 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
GALNT13
miRNAs that regulate target gene
hsa-mir-129-5p ; hsa-mir-6868-3p ; hsa-mir-942-5p ; hsa-mir-130b-5p ; hsa-mir-1237-3p ; hsa-mir-561-3p
Nearest miRNA
hsa-mir-128-1/Upstream/2917166; hsa-mir-10b/Downstream/4901258;
Nearest TSS
ENST00000437798/Upstream/28010; ENST00000494805/Downstream/16002;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/412172, chr2-CpG: 141/Downstream/411916
Upstream sequence
ctttccctcattatgtgttcttgccacctctgttgaaaatcaatttataaatacttaggtttatttctgggcttttgattctgttttactggtctatgtg
Downstream sequence
tttgtttttatgccagtcccatgcttttttgatttataatagctttatagtgtattttgaaatcaggaaatgtgatgctcaagctttgctctttttgttc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate